LOC_Os07g49210.1

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Digital Northern Data
MPSS mRNA Data
MPSS smallRNA Data
Sequence Information Orthologs in Plants
MSU V7 Model: LOC_Os07g49210.1 Brachypodium distachyon: Bradi1g16720.1
MSU V7 Locus: LOC_Os07g49210 Panicum virgatum:
Family: SNF2 Sorghum bicolor: Sb02g043870
Chromosome: Chr7 Zea mays: GRMZM2G108166_P01
5' End: 29475499 Arabidopsis thaliana: AT3G42670.1;AT5G20420.1
3' End: 29465173 Cucumis sativus: Cucsa.144310.1;Cucsa.144310.2;Cucsa.144310.3
Alternative Splice Products: Glycine max: Glyma02g42980.1;Glyma14g06090.1;Glyma18g02720.1
Putative Function: helicase conserved C-terminal domain containing protein, expressed Medicago truncatula: Medtr3g097020.1;Medtr5g090790.1;Medtr7g027270.1
RAP2 Locus: Os07g0692401 Mimulus guttatus: mgf020959m
RAP3 Locus: Os07g0692401 Populus trichocarpa: POPTR_0008s07350.1;POPTR_0010s19110.1
Ricinus communis: 29729.m002291
Vitis vinifera: GSVIVP00029366001
Sequence Quality Mutant Information
TE-related: NIAS Tos17 FST: AG214396;AB157704;AB156727;AB156460;AB156414;AB156091;AB155109;AG214855;AG214782;AG214426;AG214216;AG214078;AG213909;AG213876;AG213631;AG213003;AG212830;AG212779;AG212607;AG212278;AG211661;AG211578;AG211455;AG210740;AG210272;AG209937;AG209744;AG209738;AG209487;AG208132;AG207928;AG207608;AG207483;AG207418;AG207293;AG206585;AG206565;AG206374;AG205903;AG205809;AG024340;AG023677;AG023582;AG023489;AG022420;AG022129;AG021947;AG021656;AG021595;AG021536;AG021158;AG020956
EST/cDNA: fl_cDNA NIAS Tos17 KO Line: H0234_0_02_1A;H0655_3_201_1A;NC0122_0_502_1A;NC0158_0_401_1A;NC0453_0_401_1A;NC0472_0_401_1A;NC0657_0_501_1A;NC2578_0_404_1A;ND0040_0_501_1A;ND1005_0_501_1A;ND1021_0_501_1A;ND1056_0_405_1A;ND4031_0_405_1A;ND4549_0_402_1A;ND5023_0_401_1A;ND7062_0_103_1A;ND8018_0_704_2A;ND8035_0_704_1A;ND9026_0_404_1A;NE0045_0_101_1A;NE1515_0_502_1A;NE7015_0_501_1A;NE8020_0_702_1A;NE8022_0_404_1A;NE8531_0_401_1A;NF0044_0_502_1A;NF2037_0_402_1A;NF4868_0_402_1A;NF4906_0_402_1A;NF5018_0_501_1A;NF7040_0_401_1A;NF8048_0_401_1A;NF9003_0_502_1A;NF9014_0_402_1A;NF9842_0_404_1A;T07942T;T10166T;T10215T;T11610T;T11707T;T12430T;T13149T;T14258T;T14504T;T16494T;T16840T;T19565T;T22210T;T23835T;T24015T;T25603T;T29714T
PASA Status: PASA_validated OTL Tos17 FST: CU318956;CU318833;CU326218;CU318479;CU315236;CU321916;CU315170;CU325644;CU314688;CU325283;CU317112;CU320598;CU320473;CU324088;CU320266;CU323819;CU323793;ER893164
Topology OTL Tos17 KO Line: ADQF03;AGPG08;AHAH05;AJLB12;AJLC12;AJLD12;AMBE04;APWC01;AQAH10;AQCA12;AQYE05;ARXA06;ATCG06;ATNH07;ATWG04;AUAG09;AUME07;AUWD12
Transmembrane Domain (TM): 1 UCD Ds FST: CZ593939;CZ593919;CZ593906;CZ593738;CZ593565;CZ593436;CZ593435;CZ404182;CZ404175;CZ269634;CZ269620;CZ269533;CZ265813;CZ168237
N-terminal Signal Peptide (SignalP): SignalP UCD Ds KO Line: RGT1397_5.1;RGT1444_5.1;RGT1521_5.1;RGT280_5.1;RGT339_5.2;RGT346_5.1;RGT349_5.1;RGT374_5.1;RGT443_5.1;RGT448_5.2;RGT483_5.1;RGT57_5.1;RGT65_5.1;RGT75_3.1
Chloroplast Transit Peptide (ChloroP): OTL T-DNA FST:
Predicted Subcellular Localization: Mitochondrion OTL T-DNA KO Line:
RMD T-DNA FST:
RMD T-DNA KO Line:
TRIM T-DNA FST: EI009981
TRIM T-DNA KO Line: M0064184
Postech T-DNA FST: A00958;A25689;A37074;A00957;D10098
Postech T-DNA KO Line: 1A-19225;3A-16128;3D-01071;4A-03871