Rice TF Database  

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General Information

The Rice TF Database was created to integrate and host functional genomic information for all putative rice transcription factors (TFs) and other transcriptional regulators, as a part of Joint BioEnergy Institute (JBEI). The database contains information on 3,119 putative rice TFs (gene models). TFs were retrieved from Plant Transcription Factor Database. Our goal is to integrate disparate data sets into a logical, user-friendly format. To accomplish this, we have developed a platform to display user-selected functional genomic data on a phylogenetic tree, including sequence information, mutant line information, expression data and so on. The database also includes an interactive chromosomal map showing the positions of all rice TFs. Links are provided to the MSU/TIGR and RAP-DB rice genome annotation databases. We hope this format will make it easier to compare closely related TFs within different families as well as perform global comparisons between sets of related families. We would greatly appreciate any feedback you may have that would assist us in continually improving this database.



Last modified: Wednesday, 12-May-2010 09:10:28 PDT
UC Davis Zhejiang University Indica RDA SSAC Last Update: June 2015